Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKNYRKLIVLLLLTFFVIFMGAYAYTHIVEKRSLTSNTIEKTLPVVNQIKPQTIKEYQNYLTKVAKRNVLPVDIPQALNNEKVEITATDGMQTFTWNDKNNPKQKVIFYVHGGSYIHQASELQYIFVNKLAKKLDAKVVFPIYPKAPTYNYSDAIPKIKKLYQNTLASVTSPKQIILVGESAGGGLALGLADNLVTEHIKQPKEIILISPWLDIATNNPKIEKVQKKDPLLKAWQLQQVAPYWANGKKNFKNPQVSPLYSSQFNKMAPISFFIGTHDIFYPDNQLLHQKLAKENIKHHYIVGQKMNHVY----PVLPIPEAETAFKQMLKIINH
3L1J Chain:A ((68-278))--------------------------------------------------------------------------------------------------------KAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRLAPEHPFPAAVEDGVAAYRWLLDQGFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTNDSFKTRAEADPM---GGINKMAARYLNG-ADAKHPYASPNFAN-LKGLPPLLIHVGRDEVLLDDSIKLDAKAKADGVKSTLEIWDDMIHVWHAFHPMLPEGKQAIVRVGEFMREQW


General information:
TITO was launched using:
RESULT:

Template: 3L1J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108161 for 1774 contacts (-61.0/contact) +
2D Compatibility (PS) -21492 + (NN) -11030 + (LL) 8908
1D Compatibility (HY) -8400 + (ID) 2650
Total energy: -142825.0 ( -80.51 by residue)
QMean score : 0.568

(partial model without unconserved sides chains):
PDB file : Tito_3L1J.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3L1J-query.scw
PDB file : Tito_Scwrl_3L1J.pdb: