Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYLEQLKEVNPLTICITNNVVKNFTANGLLALGASPAMSECIEDLEDLLKVANALLINIGTLTKESWQLYQEAIKIANKNQVPVVLDPVAAGASRFRLEVSLDLLKNYSISLLRGNGSEIAALVG-EKQASKGADGGK-VADLESIAVKANQVFDVPVVVTGETDAIAVRGEVRLLQNGSPLMPLVTGTGCLLGAVLAAFIGSSDRSDDLACLTEAMTVYNVSGEIAEKVAKGKGVGSFQVAFLDALSQMKSEMIMDK
1C3Q Chain:B ((22-274))
--LTAVRRHSPLVHSITNNVVTNFTANGLLALGASPVMAYAKEEVADMAKIAGALVLNIGTLSKESVEAMIIAGKSANEHGVPVILDPVGAGATPFRTESARDIIREVRLAAIRGNAAEIAHTVGVTDWLIKGVDAGEGGGDIIRLAQQAAQKLNTVIAITGEVDVIADTSHVYTLHNGHKLLTKVTGAGCLLTSVVGAFCAVEE--NPLFAAIAAISSYGVAAQLAAQQTADKGPGSFQIELLNKLSTVTEQDVQEW
General information:
TITO was launched using:
RESULT:
Template:
1C3Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -194724 for 2238 contacts (-87.0/contact) +
2D Compatibility (PS) -27487 + (NN) -11135 + (LL) 372
1D Compatibility (HY) -14000 + (ID) 5350
Total energy: -252324.0 ( -112.75 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_1C3Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C3Q-query.scw
PDB file :
Tito_Scwrl_1C3Q.pdb
: