Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQLYYKYGTMNSGKTIEILKVAHNYEEQGKPVVIMTSALDTRDEFGVVSSRIGMRREAVPISDDMDIFSYIQNLPQKPYCVLIDECQFLSKKNVYDLARVVDDLDVPVMAFGLKNDFQNNLFEGSKHLLLLADKIDEIKTICQYCSKKATMVLRTENGKPVYEGDQIQIGGNETYIPVCRKHYFNPDI
2ORV Chain:A ((19-191))
-GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRY----------M--EALPACLLRDVAQEALGV----AVIGIDEGQFFP--DIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVE-----VIGGADKYHSVCRLCYFK---
General information:
TITO was launched using:
RESULT:
Template:
2ORV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101896 for 1311 contacts (-77.7/contact) +
2D Compatibility (PS) -17253 + (NN) -4457 + (LL) 1132
1D Compatibility (HY) -8800 + (ID) 2200
Total energy: -133474.0 ( -101.81 by residue)
QMean score : 0.372
(partial model without unconserved sides chains):
PDB file :
Tito_2ORV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ORV-query.scw
PDB file :
Tito_Scwrl_2ORV.pdb
: