Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIYFDNSATTIPYPEVLRTYQEVASKIYGNPSSLHELGTTSSRILEASRKQIASLLELKANEIFFTSGGTEADNWVIKGLA-------FEKQHFGN----HIIVSDIEHPAIKESAKWLGEYGF-EIDYAPVDD-KGFVDVEALVKLIKPETILISIMAINNEIGSIQPIKAISDLL---------SDKPTISFHIDAVQAIGKIPTKDYLTERVDFASFSSHKFHGVRGVGFLYIK---EGKRISPLLTGGGQESDLRSTTENVAGIAATAKALRMVMDKEVVAIPKISKMKTIIHDEL------AKYEDITLFSGKEDFSPNIITFGIKGVRGEVLVHAFEGHDIFISTTSACSSKAG-KPAGTLIAMGISTKLAQTAVRISLDDDNDMGQVEQFLTIFKQVYEKTKKVRG |
| 3GZD Chain:C ((27-431)) | -VYMDYNATTPLEPEVIQAMTKAMWEAWGNPSSPYSAGRKAKDIINAARESLAKMIGGKPQDIIFTSGGTESNNLVIHSVVKHFHANQTS------GAKPHFITSSVEHDSIRLPLEHLVEEQVAAVTFVPVSKVSGQTEVDDILAAVRPTTRLVTIMLANNETGIVMPVPEISQRIKALNQERVAAGLPPILVHTDAAQALGKQ-RVDVEDLGVDFLTIVGHKFYGPR-IGALYIRGLGEFTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAELVTQNCEAYEAHMRDVRDYLEERLEAEFGQKRIHLNSQFPGTQRL-PNTCNFSIRGPRLQGHVVLAQCRVLMASVGAAC-----DQPSPVLLSYGVPFDVARNALRLSVGRSTTRAEVDLVVQDLKQAVAQLED--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GZD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -168107 for 3167 contacts (-53.1/contact) +
2D Compatibility (PS) -38607 + (NN) -18341 + (LL) 344
1D Compatibility (HY) -18400 + (ID) 5800
Total energy: -248911.0 ( -78.60 by residue)
QMean score : 0.458
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