Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKSKNLRAALEKIDSTKAYSVEEAVALAK---ETNFAKFDATVEVSYNLNIDVKKADQQIRGAMVLPAGTGKTSRVLVFARGAKAEEAKAAGADFVGEDDLVAKI-QGGWLDFDVVIATPDMMALVGRLGRVLGPRNLMPNPKTGTVTMDVAKAVEESKGGKITYRADKAGNVQALIGKVSFDDAKLVDNFKAFNDVIVKAKPATAKGTYITNLSITTTQGVGIKVDPNSL
3QOY Chain:A ((1-233))
MARRGKKYIEASKLVDRNKRYTLEEAVDLLKKMEEVLQRRFDETVELAMRLNVDPRYADQMVRGSVVLPHGLGKPIKVVVFAEGEYAKKAEEAGADYVGGDELINKILKEEWTDFDVAIATPEMMPKVAKLGRILGPRGLMPSPKTGTVTTNVEQAIKDAKRGRVEFKVDKAGNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKPPGAKGQYIKNMAVSLTMSPSVKLDINEV
General information:
TITO was launched using:
RESULT:
Template:
3QOY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112682 for 1822 contacts (-61.8/contact) +
2D Compatibility (PS) -25218 + (NN) -17114 + (LL) 0
1D Compatibility (HY) -19200 + (ID) 5650
Total energy: -179864.0 ( -98.72 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_3QOY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QOY-query.scw
PDB file :
Tito_Scwrl_3QOY.pdb
: