Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQFLGEFLGTFILVLLGDGVVAGNVLSKTKEEGTGWTAIVFGWGIACTVAVYVSGLFSPAHLNPAVTLAMASIGAISWGQVIPFIIAQMLGAMVAATILWLHYY-PHWKETKDSGLILASFSTGPAIRHTPSNLLGEIIGTAILVITIM-AIGPSKVAAG-----LGPIIVGIVIFAVGFSLGPTTGYAINPARDLGPRLMHAILPIENKGDSDWSYAWIPVVGPIIGGVLGAILYNIALTLI
3CN6 Chain:A ((65-288))
----IAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTA-------LGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGA----AVIFNSNK---VWDDQWIFWVGPFIGAAVAAAYHQYVLRA-
General information:
TITO was launched using:
RESULT:
Template:
3CN6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -179892 for 1922 contacts (-93.6/contact) +
2D Compatibility (PS) -21611 + (NN) 2798 + (LL) 1092
1D Compatibility (HY) -18000 + (ID) 3350
Total energy: -218963.0 ( -113.92 by residue)
QMean score : 0.303
(partial model without unconserved sides chains):
PDB file :
Tito_3CN6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CN6-query.scw
PDB file :
Tito_Scwrl_3CN6.pdb
: