Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTVHSSIDQHPDLLALRASFDRAAESTIAHFTFGLALLAGLYVAASPWIVGFSATRGLPTCDLIVGIAVAYLAYGFASALDRTHGMTWTLPVLGVWVIFSPWVLPGVAVTAGMMWSHIIAGAVVAVLGFYFGMRTRAAANQG
3S1D Chain:A ((353-380))
----------------------------------------------------------------------------YAAFLDRVHGSEVALNKLGLWRVPHPWL---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3S1D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7421 for 101 contacts (-73.5/contact) +
2D Compatibility (PS) -2569 + (NN) 1597 + (LL) 8996
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -2397.0 ( -23.73 by residue)
QMean score : -0.151
(partial model without unconserved sides chains):
PDB file :
Tito_3S1D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S1D-query.scw
PDB file :
Tito_Scwrl_3S1D.pdb
: