Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPQTTDEAASVSTVADIKPRSRDVTDGLEKAAARGMLRAVGMDDEDFAKPQIGVASSWNE-ITPCNLSLDRLANAVKEGVFSAGGYPLEFGTISVSDGISMGHEGMHFSLVSREVIADSVEVVMQAERLDGSVLLA---GCDKSLPGMLMAAARLDLAAVFLYAGSILPGRAKLSDGSERDVTII-DAFEA----VGACSRGL---MS-RADVDAIERAICP--GE--GACGGMYTANTMASAAEALGMSLPGSAAPPATDRRRDGFARRSGQAVVELLRRGITARDILTKEAFENAIAVVMAFGGSTNAVLHLLAIAHEANVALSLQDFSRIGSGVPHLADVKPFGRHVMSDVDHIGGVPVVMKALLDAGLLHGDCLTVTGHTMAENLAAITPPDPDGKVLRALANPIHPSGGITILHGSLAPEGAVVKTAGFDSDVFEGTARVFDGERAALDALEDGTITVGDAVVIRYEGPKGGPGMREMLAITGAIKGAGLGKDVLLLTDGRFSGGTTGLCVGHIAPEAVDGGPIALLRNGDRIRLDVAGRVLDVLADPAEFASRQQDFSPPPPRYTTGVLSKYVKLVSSAAVGAVCG |
4GIM Chain:A ((47-235)) | -----------------------------------------------KKPVVALESTIISHGMPF-PQNAQTAIEVEETIRKQGAVP---ATIAIIGGVMK--VGLSKEEIEL--LGREGHNVTKVSRRDLPFVVAAGKNGATTVASTMIIAALAGIK-VFATGGI--GGVHRGAEH---TFDISADLQELANTNVTVVCAGAASILDLGLTTEYLETFGVPLIGYQTKALPAFFCRTS--------PFDVSIRLDSA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GIM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -43293 for 1335 contacts (-32.4/contact) +
2D Compatibility (PS) -18267 + (NN) -3662 + (LL) 23444
1D Compatibility (HY) -4800 + (ID) 1600
Total energy: -48178.0 ( -36.09 by residue)
QMean score : 0.166
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