Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTGTATTRRRLLAVLIALALPGAA-----VALLAEPSATGASDPCAASEVARTVGSVAKSMGDYLDSHPETNQVMTAVLQQQVGPGSVASLKAHFEANPKVASDLHALSQPLTDLSTRCSLPISGLQAIGLMQAVQGARR
4GTY Chain:B ((242-341))
---GSVPFEERILAVLEWLQLPSHERPHFYTLYLEEPDSSGHSHGPVSSEVIKALQKVDRLVGMLMD--------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4GTY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1027 for 294 contacts (-3.5/contact) +
2D Compatibility (PS) -6243 + (NN) -2697 + (LL) 5208
1D Compatibility (HY) -4400 + (ID) 1000
Total energy: -10159.0 ( -34.55 by residue)
QMean score : 0.143
(partial model without unconserved sides chains):
PDB file :
Tito_4GTY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GTY-query.scw
PDB file :
Tito_Scwrl_4GTY.pdb
: