Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGAAGDAAIGRESRELMSAADVGRTISRIAHQIIEKTALDDPVGPDAPRVVLLGIPTRGVTLANRLAGNITEYSGIHVGHGALDITLYRDDLMIKPP--RPLASTSIPAGGIDDALVILVDDVLYSGRSVRSALDALRDVGRPRAVQLAVLVDRGHRELPLRADYVGKNVPTSRSESVHVRLREHDGRDGVVISR
4P86 Chain:A ((16-178))
-----------------------RALTRIAHEMIER-------NKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLS--TSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAVLVDRGHRELPIRADYIGKNIPTSKSEKVMVQLDEVDQNDLVAI--
General information:
TITO was launched using:
RESULT:
Template:
4P86.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122873 for 1201 contacts (-102.3/contact) +
2D Compatibility (PS) -17334 + (NN) -6717 + (LL) 1976
1D Compatibility (HY) -17200 + (ID) 4500
Total energy: -166648.0 ( -138.76 by residue)
QMean score : 0.464
(partial model without unconserved sides chains):
PDB file :
Tito_4P86.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P86-query.scw
PDB file :
Tito_Scwrl_4P86.pdb
: