Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MALAKRIIPCLDV---DNGRVV--KGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDG--RDT-TLHTVERMASQVFIPLTVGGGVRSVQDIRN-----------LLNAGADKVSINTAAVFNPEFVGEAADR-------------FGSQCIVVAIDAKKVSAPGEA-------------PRWEIFT------HGGRKPTGLDAVLWAKKMEDLGAGEILLTSMDQDGVKSGYDLGVTRAISEAVNVPVIASGGVGNLEHLAAGILEGKADAVLAASIFHFGEYTVPEAKAYLASRGIVVR |
1OX4 Chain:B ((241-551)) | --LTRRIIACLDVRTNDQGDLVVTKGD-------LGKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYLLEHGLKVR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1OX4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -35097 for 1978 contacts (-17.7/contact) +
2D Compatibility (PS) -26472 + (NN) -3043 + (LL) 800
1D Compatibility (HY) 7600 + (ID) 900
Total energy: -57112.0 ( -28.87 by residue)
QMean score : 0.198
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