Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPIPNNPGAGENAFDPVFVNDDDGYDLDSFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVYNNEEFHILCLLKGSRGFFTALLKHLSRIHNYSAVETSKPLFGEHYVRVKSYCNDQSTGTLEIVS-EDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLFIKRTPLWNGFKADFVGFSIPDHFVVGYSLDYNEIFRDLDHCCLVNDEGKKKYKATSL
3GGJ Chain:A ((8-217))
----------------VISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNS--DRSIPMTVD-FIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA---
General information:
TITO was launched using:
RESULT:
Template:
3GGJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -201413 for 1614 contacts (-124.8/contact) +
2D Compatibility (PS) -22235 + (NN) -4891 + (LL) 296
1D Compatibility (HY) -24400 + (ID) 5200
Total energy: -257843.0 ( -159.75 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_3GGJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GGJ-query.scw
PDB file :
Tito_Scwrl_3GGJ.pdb
: