Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPIPNNPGAGENAFDPVFVNDDDGYDLDSFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVYNNEEFHILCLLKGSRGFFTALLKHLSRIHNYSAVETSKPLFGEHYVRVKSYCNDQSTGTLEIVS-EDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLFIKRTPLWNGFKADFVGFSIPDHFVVGYSLDYNEIFRDLDHCCLVNDEGKKKYKATSL
3GGJ Chain:A ((8-217))----------------VISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNS--DRSIPMTVD-FIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA---


General information:
TITO was launched using:
RESULT:

Template: 3GGJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -201413 for 1614 contacts (-124.8/contact) +
2D Compatibility (PS) -22235 + (NN) -4891 + (LL) 296
1D Compatibility (HY) -24400 + (ID) 5200
Total energy: -257843.0 ( -159.75 by residue)
QMean score : 0.604

(partial model without unconserved sides chains):
PDB file : Tito_3GGJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3GGJ-query.scw
PDB file : Tito_Scwrl_3GGJ.pdb: