Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAASGEQAPCSVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEAYLPQKTASSSHPSA
4KXM Chain:D ((4-144))
----------SVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEHVAD-----------GGDQFIHEQNLNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEAYL------------
General information:
TITO was launched using:
RESULT:
Template:
4KXM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98948 for 992 contacts (-99.7/contact) +
2D Compatibility (PS) -14465 + (NN) -9394 + (LL) 1644
1D Compatibility (HY) -19600 + (ID) 6450
Total energy: -147213.0 ( -148.40 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_4KXM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KXM-query.scw
PDB file :
Tito_Scwrl_4KXM.pdb
: