Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVPHLLLLCLLPLVRATEPHEGRADEQSAEAALAVPNASHFFSWNNYTFSDWQNFVGRRRYGAESQNPTVKALLIVAYSFIIVFSLFGNVLVCHVIFKNQRMHSATSLFIVNLAVADIMITLLNTPFTLVRFVNSTWIFGKGMCHVSRFAQYCSLHVSALTLTAIAVDRHQVIMH---PLKPRISITKGVIYIAVIWTMATFFSLPHAICQKLFTFKYSEDIVRSLCLPDFPEPADLFWK-YLDLATFILLYILPLLIISVAYARVAKKL--------------------------------------WLCNMIGDVTTEQYFALRRKKK--KTIKMLMLVVVLFALCWFPLNCYVLLLS----------SKVIRTNNALYFAFHWFAMSSTCYNPFIYCWLNENFRIELKALLSMCQRPPKPQEDRPPSPVPSFRVAWTEKNDGQRAPLANNLLPTSQLQSGKTDLSSVEPIVTMS |
| 4MBS Chain:A ((39-358)) | -----------------------------------------------------------------------------YSLVFIFGFVGNMLVILILINYKRLKSMTDIYLLNLAISDLFF-LLTVPF-WAHYAAAQWDFGNTMCQLLTGLYFIGFFSGIFFIILLTIDRYLAVVHAVFALKAR-TVTFGVVTSVITWVVAVFASLPNII----FTRSQKEGL-HYTCSSHFPYSQYQFWKNFQTLKIVILGLVLPLLVMVICYSGILKTLLRMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCG-VGKDQFEEVEEEKKRHRDVRLIFTIMIVYFLFWAPYNIVLLLNTFQEFFGLNNCSSSNRLDQAMQVT-ETLGMTHCCINPIIYAFVGEEFRNYLLVFFQ-------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MBS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -247871 for 1929 contacts (-128.5/contact) +
2D Compatibility (PS) -27483 + (NN) -10716 + (LL) 9220
1D Compatibility (HY) -35200 + (ID) 4150
Total energy: -316200.0 ( -163.92 by residue)
QMean score : 0.292
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