Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MALNDCFLLNLEVDHFMHCNISSHSADLPVNDDWSHPGILYVIPAVYGVIILIGLIGNITLIKIFCTVKSMRNVPNLFISSLALGDLLLLITCAPVDASRYLADRWLFGRIGCKLIPFIQLTSVGVSVFTLTALSADRYKAIVRPMDIQASHALMKICLKAAFIWIISMLLAIPEAVFSDLHPFHEESTNQTFISC-APYPHSNELHPKIHSMASFLVFYVIPLSIISVYYYFIAKNLIQSAYNLPVEGNIHVKKQIESRKRLA-------KTVLVFVGLFAFCWLPNHVIYLYRSYHYSEVDTSMLHFVTSICARLLAFTNSCVNPFALYLLSKSFRKQFNTQLLCCQPGLIIRSHSTGRSTTCMTSLKSTNPSVATFSLINGNICHERYV |
| 4LDO Chain:A ((188-463)) | ---------------------------------------------VMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS-----FLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIM----VFVYSRVFQEA-----------KRQLQ---KFALKEHKALKTLGIIMGTFTLCWLPFFIVNIVHV-----IQDNLIRKEVYILLNWIGYVNSGFNPL-IYCRSPDFRIAFQ-ELLCL-------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -205659 for 1999 contacts (-102.9/contact) +
2D Compatibility (PS) -26632 + (NN) 1295 + (LL) 6784
1D Compatibility (HY) -30400 + (ID) 3900
Total energy: -258512.0 ( -129.32 by residue)
QMean score : 0.233
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