Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSENGSFANCCEAGGWAVRPGWSGAGSARPSRTPRPPWV-APALSAVLIVTTAVDVVGNLLVILSVLRNRKLRNAGNLFLVSLALADLVVAFYPYPLILVAIFYDGWALGEEHCKASAFVMGLSVIGSVFNITAIAINRYCYICHSMAYHRIYRRWHTPLHICLI----WLLTVVALLPNFFVGSLEYDPRIYSCTFIQTASTQY-----TAAVVVIHFLLPIAVVSFCYLRIWVLVLQARRKAKPESRLCLKPSDLRSFLTM-FVVFVIFAICWAPLNCIGLAVAINPQEMAPQIPEGLFVT-----SYLLAYFNSCLNAIVYGLLNQNFRREYKRILLALWNPRHCIQDASKGSHAEGLQSPAPPIIGVQHQADAL |
| 5C1M Chain:A ((1-294)) | -----------------------GSHSL-P-QTGSPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALAD-ALATSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVK----ALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCY-GLMILRLKSVRMLSGSKE---KDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKAL------ITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCF------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 5C1M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -264573 for 2021 contacts (-130.9/contact) +
2D Compatibility (PS) -28644 + (NN) -16674 + (LL) 4744
1D Compatibility (HY) -33200 + (ID) 4150
Total energy: -342497.0 ( -169.47 by residue)
QMean score : 0.358
|
|
|