Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEIVSTGNETITEFVLLGFYDIPELHFLFFIVFTAVYVFIIIGNMLIIVAVVSSQRLHKPMYIFLANLSFLDILYTSAVMPKMLEGFLQEATISVAGCLLQFFIFGSL------------ATAECLLLAVMAYDRYLAICYPLHYPLLMGPRRYMGLVVTTWLSGFVVDGLVVALVAQLRFCGPNHIDQFYCDFMLFVGLACSDPRVAQVTTLILSVFCLTIPFGLILTSYARI---------VVAVLRVPAGASRRRAFSTCSSHLAVVTTFYGTLMIFYVAPSAVHSQLLSKVFSLLYTVVTPLFNPVIYTMRNKEVHQALRKILCIKQTETLD |
| 3NYA Chain:A ((46-316)) | ------------------------------IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVP-----------FGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW----IVSGLTSFLPIQMHWYRATHQEAINC----YAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGL-RLKIYKDTEGYY---TIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLF---NQDVDAAVRGILRNAKLKPVY |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3NYA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -202743 for 1585 contacts (-127.9/contact) +
2D Compatibility (PS) -24834 + (NN) 727 + (LL) 5124
1D Compatibility (HY) -20400 + (ID) 3300
Total energy: -245426.0 ( -154.84 by residue)
QMean score : 0.248
|
|
|