Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MALNHTALPQDERLPHYLRDGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSRRKKKLRPAEIMTINLAVCDLGISVVGKPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGSLITMTAVSLDRYLKICYLSYGVWLKRKHAYICLAAIWAYASFWTTMPLVGLGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVW------SAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEWE |
4PXF Chain:A ((35-326)) | -----------------------------WQFSMLAA-YMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQ----QQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFG-----PIFMT-IPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN---------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PXF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -204249 for 2254 contacts (-90.6/contact) +
2D Compatibility (PS) -28508 + (NN) 410 + (LL) 4888
1D Compatibility (HY) -29200 + (ID) 4000
Total energy: -260659.0 ( -115.64 by residue)
QMean score : 0.161
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