Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MENYNQTSTDFILLGLFPPSRIDLFFFILIVFIFLMALIG---NLSMILLIFLDTHLHTPMYFLLSQLSLIDLNYISTIVPKMASDFLHGNKSISFTGCGIQSFFFLALGGAEALL-LASMAYDRYIAICFPLHYLIRMSKRVCVLMITGSWIIGSINACAHTVYVLHIPYCRSRAINHFFCDVPAMVTLAC-MDTWV-YEGTVFLSATIFL-----VFPFIGISCSYGQVLF-----AVYHMKSAEGRKK-------------AYLTCSTHLTVVTFYYAPFVYTYLRPRSLRSPTEDKVLAVFYTILTPMLNPIIYSLRNKEVMGALTRVSQRICSVKM |
4PXF Chain:A ((37-312)) | -------------------------FSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFF-ATLGGEIALWSLVVLAIERYVVVCKPMSNF-RFGENHAIMGVAFTWVMAL--ACAAPPLVGWSRY------------IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIP-------AFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PXF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -212396 for 1829 contacts (-116.1/contact) +
2D Compatibility (PS) -24828 + (NN) -500 + (LL) 3544
1D Compatibility (HY) -21600 + (ID) 3600
Total energy: -259380.0 ( -141.82 by residue)
QMean score : 0.152
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