Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQNQSFVTEFVLLGLSQNPNVQEIVFVVFLFVYIATVGGNMLIVVTILSSPALLVSPMYFFLGFLSFLDACFSSVITPKMIVDSLYVTKTISFEGCMMQLFAEHFFAGVEVIVLTA-------MAYDRYVAICKPLHYSSIMNRRLCGILMGVAWTGGLLHSMI------------QILFTFQLPFCGPNVINHF------MCDLY-PLLELACTDTHIFGLMVVINSGFICIINFSLLLVSYAVILLSLRTHSSEGRWKALSTCGSHIAVVILFFVPCIFVYTRPPSAFSLDKMAAIFYIILNPL------LNPLIYTFRNKEVKQAMRRIWNRLMVVSDEKENIKL |
| 2YCW Chain:A ((26-296)) | ------------------------------------VAGNVLVIAAI-GSTQRLQTLTNLFITSLACADLVVGLLVVP---FGATLVVRGTWLWGS----FLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIM------IFVALRVYREAKEQIRKIDRASKRKRVML--MREH------KALKTLGIIMGVFTLCWLP--FFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAF------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195607 for 1616 contacts (-121.0/contact) +
2D Compatibility (PS) -23806 + (NN) -840 + (LL) 7084
1D Compatibility (HY) -23200 + (ID) 3500
Total energy: -239869.0 ( -148.43 by residue)
QMean score : 0.093
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