Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTHTLYPTPFALYPINISAAWHLGPLPVSCFVSNKYQCSLAFGATTGLRVLVVVVPQTQLSFLSSLCLVSLFLHSLVSAHGEKPTKPVGLDPTLFQVVVGILGNFSLLYYYMFLYFRGYKPRSTDLILRHLTVADSLVILSKRIPETMAT-FGLKHFDNYFGCKFLLYAHRVGRGVSIGSTCLLSV--FQVITINPRNSRWAEMKVKAPTYIGLSNILCWAFHMLVNAIFPIYTTGKWSNNNITKKGDLGYCSAPLSDE---VTKSVYAA-LTSFHDVLCLGLMLWASSSIVLVLYRHKQQVQHICRNNLYPNSSPGNRAIQSILALVSTFALCYALSFITYVYLALFDNS-----SWWLVNTAALIIACFPTISPFVLMCRDPSRSRLCSICCRRNRRFFHDFRKM |
| 2KS9 Chain:A ((38-324)) | -------------------------------------------------------------------------------------------AYTVIVVTSVVGNVVVMWIILAH---KRMRTVTNYFLVNLAFAEASMAAFN-TVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAII-HPLQPR----L--SATATKVVICVIWVLALLLAFPQGYYSTTET-------MPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSSD--RYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPFISAGDYEG |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KS9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -146913 for 2110 contacts (-69.6/contact) +
2D Compatibility (PS) -27832 + (NN) -7398 + (LL) 7668
1D Compatibility (HY) -17600 + (ID) 2050
Total energy: -194125.0 ( -92.00 by residue)
QMean score : 0.176
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