Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVVARAALSCSTVYNTLLPCLPYVQ---SGGAVPA----ACCGGIRSVVAAARTTADRRAACTCLKNVAAGAAGGPY----------ISRAAGLPGRCGVSVPFKISPNVNCNAVN---------
1HSS Chain:A ((5-124))
MCYPGQAFQ----VPALPACRPLLRLQCNGSQVPEAVLRDCCQQLAHI--------SEWCRCGALYSMLDSMYKEHGAFPRCRREVVKLTAASITAVCRLPIV--VDASGDGAYVCKDVAAYPDA
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57801 for 556 contacts (-104.0/contact) +
2D Compatibility (PS) -8968 + (NN) -2911 + (LL) 1440
1D Compatibility (HY) -6400 + (ID) 750
Total energy: -75390.0 ( -135.59 by residue)
QMean score : 0.197
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: