Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPPLGTCGAQL---SQLAPCARYSV----PP-LPGQA---LPAPGPECCSALGSVSRDCACGAIDI-----------------------INSLPAKCGLPRVSCQ
2LVF Chain:A ((5-106))
---QEECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLSPMRCP
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20649 for 403 contacts (-51.2/contact) +
2D Compatibility (PS) -6754 + (NN) -125 + (LL) -160
1D Compatibility (HY) -6800 + (ID) 750
Total energy: -35238.0 ( -87.44 by residue)
QMean score : 0.384
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: