Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQCRDELSNVQVCAPLLL----PGAVNP-------AANSNCCAALQATNKDCLCNALRA-----------------------ATTLTSLCNLPSFDCGISA
2LVF Chain:A ((16-108))
-------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLSPMRCPMG-
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28032 for 326 contacts (-86.0/contact) +
2D Compatibility (PS) -6496 + (NN) -6558 + (LL) 744
1D Compatibility (HY) -5200 + (ID) 750
Total energy: -46292.0 ( -142.00 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: