Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSCNAQLSTLNVCGEFVV----PGADRT-------NPSAECCNALEAVPNECLCNTFRI-----------------------ASRLPSRCNIPTLSCS
2LVF Chain:A ((16-105))
-------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLSPMRC-
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26324 for 304 contacts (-86.6/contact) +
2D Compatibility (PS) -5787 + (NN) -2420 + (LL) 480
1D Compatibility (HY) -5600 + (ID) 900
Total energy: -40551.0 ( -133.39 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: