Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VCNMSNDEFMKCQPAAAATSNPTTNPSAGCCSALSHADL----------NCLCSYKNSPWLSIY-NIDPNRAMQLPAKCGLTMPANC
1AFH Chain:A ((4-81))
-CGQVASAIAPCISYARGQGS---GPSAGCCSGVRSLNNAARTTADRRAACNC-LKNA--AAGVSGLNAGNAASIPSKCGVSIPY--
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15032 for 486 contacts (-30.9/contact) +
2D Compatibility (PS) -6832 + (NN) -1890 + (LL) 120
1D Compatibility (HY) -3200 + (ID) 1000
Total energy: -27834.0 ( -57.27 by residue)
QMean score : 0.205
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: