Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADF----------ACLCGYKNSPWLGSF-GVDPELASALPKQCGLANAPTC
1AFH Chain:A ((3-80))
--SCGQVASAIAPCISYARGQGS-GPSAGCCSGVRSLNNAARTTADRRAACNC-LKNA--AAGVSGLNAGNAASIPSKCGVSIP---
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9377 for 485 contacts (-19.3/contact) +
2D Compatibility (PS) -7054 + (NN) -2668 + (LL) -8
1D Compatibility (HY) -2800 + (ID) 850
Total energy: -22757.0 ( -46.92 by residue)
QMean score : 0.289
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: