Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVDTGAAAGVPSCASKLVPCGGYLNATAAPPPASCCGPLREAAANE-------TACLCAILTNKAALQAF-GVAPEQGLLLAKRCGVTTDASACAKSASSSATAAAAAAV
1T12 Chain:A ((3-78))
--------TCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTC--LKSA--AGAISGINLGKAAGLPSTCGVNIP--------------------
General information:
TITO was launched using:
RESULT:
Template:
1T12.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27027 for 472 contacts (-57.3/contact) +
2D Compatibility (PS) -6676 + (NN) -724 + (LL) 3020
1D Compatibility (HY) -4800 + (ID) 1050
Total energy: -37257.0 ( -78.93 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_1T12.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T12-query.scw
PDB file :
Tito_Scwrl_1T12.pdb
: