Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------------------------------------NRA-LTCGTVNS--NVAPCIGYITQGGTLPG---ACCTGVSKLNSMAR-----------TTPDRQQACRCLETAARAL----GPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK--------
1QPO Chain:A ((116-284))
IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDS-LEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATY-AETGVDY---LAVGALTHSVRVLDIGLDM
General information:
TITO was launched using:
RESULT:
Template:
1QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32985 for 486 contacts (-67.9/contact) +
2D Compatibility (PS) -9199 + (NN) 1268 + (LL) -460
1D Compatibility (HY) -3200 + (ID) 650
Total energy: -45226.0 ( -93.06 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_1QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QPO-query.scw
PDB file :
Tito_Scwrl_1QPO.pdb
: