Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------------------------------------------ITCSDVNK--ALAPCVSYLTGGGAPTSAC---CDGVRTLKSLSP-----------TTSDRQTACQCAKDAASRNP-----NIREDAAAALPNKCGVQT-----DIPISRSTDCST--
1QPO Chain:A ((116-284))
IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAAGSVVDALRAVRNA-APDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATY-AETGVDYLAVGALTHSVRVLDIGLDM
General information:
TITO was launched using:
RESULT:
Template:
1QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18572 for 428 contacts (-43.4/contact) +
2D Compatibility (PS) -9109 + (NN) -3908 + (LL) -312
1D Compatibility (HY) -3200 + (ID) 950
Total energy: -36051.0 ( -84.23 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_1QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QPO-query.scw
PDB file :
Tito_Scwrl_1QPO.pdb
: