Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------------------------------------------------AITCGQVSSAIAPCLSYARGMGSAPSAGC---CSGVRNLKSAAS-----------TAADRRAACNCLKNAARGV-----SGLNAGNAASIPSKCGVSIPYTISTSTDCSR--------
1QPO Chain:A ((116-284))
IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAA------GSVVDALRAVR--NAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATY-AETGVDY-LAVGALTHSVRVLDIGLDM
General information:
TITO was launched using:
RESULT:
Template:
1QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24535 for 409 contacts (-60.0/contact) +
2D Compatibility (PS) -9076 + (NN) -6461 + (LL) -24
1D Compatibility (HY) -2800 + (ID) 900
Total energy: -43796.0 ( -107.08 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_1QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QPO-query.scw
PDB file :
Tito_Scwrl_1QPO.pdb
: