Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSVC----NVPISGLMACKPAV-----TPPNPSAPTSACCSALTHADMRCLCS---------YKNSNVLPSLGID----PNLALQLPPKCKLPRPNC------------------
1HSS Chain:A ((5-124))
--MCYPGQAFQVPALPACRPLLRLQCNGSQVPEAVLRDCCQQLAHISEWCRCGALYSMLDSMYKEHGAFP--RCRREVVKLTAASITAVCRLPIVVDASGDGAYVCKDVAAYPDA
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32947 for 384 contacts (-85.8/contact) +
2D Compatibility (PS) -7474 + (NN) -3462 + (LL) 240
1D Compatibility (HY) -4400 + (ID) 1000
Total energy: -49043.0 ( -127.72 by residue)
QMean score : 0.464
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: