Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVCDMSNEQFMSCQPAAAKTTDPPAAPSQACCDALAGADL----------KCLCGYKNSPWMGVY-NIDPKRAMELPAKCGLATPPDC
1AFH Chain:A ((3-81))
-SCGQVASAIAPCISYARGQGS---GPSAGCCSGVRSLNNAARTTADRRAACNC-LKNA--AAGVSGLNAGNAASIPSKCGVSIPY--
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13874 for 493 contacts (-28.1/contact) +
2D Compatibility (PS) -7191 + (NN) -4638 + (LL) -168
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -29121.0 ( -59.07 by residue)
QMean score : 0.344
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: