Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
EMAHGVCNLSSAGIRACQPAAAIRNPTDQPSSECCAALAG--------ADLA--CLCRYKNAAGVWVRFY-RIDINRAMGLPGKCGLAMPANC
1SIY Chain:A ((2-78))
-----TCGQVQGNLAQCIGFLQKGG---VVPPSCCTGVKNILNSSRTTADRRAVCSCL-KAAA----GAVRGINPNNAEALPGKCGVNIP---
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23315 for 431 contacts (-54.1/contact) +
2D Compatibility (PS) -6989 + (NN) -4075 + (LL) 744
1D Compatibility (HY) -2400 + (ID) 1050
Total energy: -37085.0 ( -86.04 by residue)
QMean score : 0.109
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: