Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DQQVSACQNDIDALWRSCKQFVQKEGPKMPPSEDCCKTIKALDAH--------ASCICDYVGSPDARNK--LDLDKVFFVTKQCGVTVP----KG--CGSKQD
1T12 Chain:A ((3-89))
-----TCGQVTSNL-APCLAYLRNTG----PLGRCCGGVKALVNSARTTEDRQIACTC--L-KSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSK---
General information:
TITO was launched using:
RESULT:
Template:
1T12.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17952 for 480 contacts (-37.4/contact) +
2D Compatibility (PS) -7381 + (NN) -2357 + (LL) 428
1D Compatibility (HY) -5600 + (ID) 1000
Total energy: -33862.0 ( -70.55 by residue)
QMean score : 0.321
(partial model without unconserved sides chains):
PDB file :
Tito_1T12.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T12-query.scw
PDB file :
Tito_Scwrl_1T12.pdb
: