Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQCLENLSDMQVCAPLVL----PGAVNP-------APNSNCCIALQATNKDCICNALRA-----------------------ATTFTTTCNLPSLDC
2LVF Chain:A ((16-105))
-------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLSPMRC
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24517 for 304 contacts (-80.6/contact) +
2D Compatibility (PS) -5878 + (NN) -3646 + (LL) 672
1D Compatibility (HY) -4800 + (ID) 700
Total energy: -38869.0 ( -127.86 by residue)
QMean score : 0.346
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: