Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QICTSQLNSLNVCAPFVV----PGA-PNT------NPSTDCCNALGAVQHDCLCSTLQI-----------------------AARLPSQCNLPPITCGN
2LVF Chain:A ((16-106))
-------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLSPMRCP-
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29003 for 314 contacts (-92.4/contact) +
2D Compatibility (PS) -5875 + (NN) -3297 + (LL) 620
1D Compatibility (HY) -5600 + (ID) 800
Total energy: -43955.0 ( -139.98 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: