Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSADCAATA---ELLSPCASAVG----NNP-QD--------PTPECCAVLQTADVDCICALVE-----------------------STIKLPSECGLDTPQCPSD
2LVF Chain:A ((6-107))
--EECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLSPMRCPM-
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28187 for 363 contacts (-77.7/contact) +
2D Compatibility (PS) -6500 + (NN) -3702 + (LL) 16
1D Compatibility (HY) -4000 + (ID) 900
Total energy: -43273.0 ( -119.21 by residue)
QMean score : 0.691
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: