Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
TTNEPTVCNIALTKLNLCRPAVTGQYPPPPTKECCGLMKQANLTCLCKFKEA--LPAFEIDPARAFALPKKCNLRTPPQCKV
1N89 Chain:A ((5-67))
------------SQLAVCASAILSG--AKPSGECCGNLRAQQ-GCFCQYAKDPTYGQ-YIRSPHARDTLTSCGLAVP-HC--
General information:
TITO was launched using:
RESULT:
Template:
1N89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16848 for 389 contacts (-43.3/contact) +
2D Compatibility (PS) -6499 + (NN) -7096 + (LL) 1108
1D Compatibility (HY) -5200 + (ID) 800
Total energy: -35335.0 ( -90.84 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_1N89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N89-query.scw
PDB file :
Tito_Scwrl_1N89.pdb
: