Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DMSPSQCKEEQRLLVNACRPVIFG-RSPSAACCQRVRVTHVECVCPVVT-PKLAALIGVERTIKQIEGCGRTVPHNFKCGSITTP
1L6H Chain:A ((8-69))
--------------LTVCTGAIAGGARPTAACCSSLRAQ-QGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALP---TCH-----
General information:
TITO was launched using:
RESULT:
Template:
1L6H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29452 for 410 contacts (-71.8/contact) +
2D Compatibility (PS) -6064 + (NN) -871 + (LL) 1236
1D Compatibility (HY) -4000 + (ID) 850
Total energy: -40001.0 ( -97.56 by residue)
QMean score : 0.153
(partial model without unconserved sides chains):
PDB file :
Tito_1L6H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L6H-query.scw
PDB file :
Tito_Scwrl_1L6H.pdb
: