Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSCPQTI-TFSPCLTNVGNTGTPPAYDSQCCKLVRDPKW--------TDQCLCAVVSSHF-PGVDETKALNLAHDCGRRVP----KGIYCDGRPVPP
1SIY Chain:A ((2-89))
-TCGQVQGNLAQCIGFLQKG-GVV--PPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNS-----
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19070 for 504 contacts (-37.8/contact) +
2D Compatibility (PS) -7848 + (NN) -5609 + (LL) 56
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -35221.0 ( -69.88 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: