Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ATAQCRSLTEYSPCLDAVTTGAEPTDQCCETLAGVMSMDDG-----LACLCDALTSDAASSL-GIRTSDAVQLPSKCQAKTGLTYTHGYNCKGATVP
1SIY Chain:A ((5-89))
-----QVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCL---KAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNS----
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23378 for 580 contacts (-40.3/contact) +
2D Compatibility (PS) -8269 + (NN) -4133 + (LL) 1136
1D Compatibility (HY) -4800 + (ID) 850
Total energy: -40294.0 ( -69.47 by residue)
QMean score : 0.402
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: