Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVQGQGACNA--ATLQPCLAASKGTAA-PTTQCCAAVKNVGG---AAGGPQCLCSLTTSALARANGVNPDAAMAIPQKCGLAVP----KGFTCNNKPVPGS
1AFH Chain:A ((1-92))
----AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV-----
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29229 for 586 contacts (-49.9/contact) +
2D Compatibility (PS) -8424 + (NN) -2060 + (LL) 44
1D Compatibility (HY) -4400 + (ID) 1050
Total energy: -45119.0 ( -76.99 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: