Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VCDMDNDDFMACQPAAAATTSPTPPDPSAACCATLGKADL----------KCLCSYKKSPWLSLY-NIDPKRAMELPAKCGLSPPADC
1AFH Chain:A ((4-81))
-CGQVASAIAPCISYAR---GQGS-GPSAGCCSGVRSLNNAARTTADRRAACNC-LKNA--AAGVSGLNAGNAASIPSKCGVSIPY--
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13974 for 486 contacts (-28.8/contact) +
2D Compatibility (PS) -7207 + (NN) -7475 + (LL) 268
1D Compatibility (HY) -2800 + (ID) 900
Total energy: -32088.0 ( -66.02 by residue)
QMean score : 0.266
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: