Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------------------------------------------LSCGDVAT--QLAPCINYLRSAGPLPP---ACCNGVKNLKNSAA-----------TTQDRRTACKCLINASKSI-----SGVNFGLAAGLPGKCGVNIPYKISPSTNCDQVN--------
1QPO Chain:A ((116-284))
IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDS-LEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATY-AETGVDY---LAVGALTHSVRVLDIGLDM
General information:
TITO was launched using:
RESULT:
Template:
1QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25684 for 459 contacts (-56.0/contact) +
2D Compatibility (PS) -9059 + (NN) -3234 + (LL) -296
1D Compatibility (HY) -2400 + (ID) 750
Total energy: -41423.0 ( -90.25 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_1QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QPO-query.scw
PDB file :
Tito_Scwrl_1QPO.pdb
: