Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDRLKKIHWLLVTNVIALFCIGIVVQYSSAGGKWAPFAIHQLVIFSFFFLLAIAMSFIELDFYLKHAYFFYIAAVISLLVVNFFGLYTMGATRWIRIGPISLQPSEFAKVGLILALARYFNKQSVYKMMEFQRLLKALIFIFLPVFLVLKQPNLGTAVIMLFIGASIIFTAIIKRAHLIIYGIISILVIPAIWPSLRSYHKQRILSFLDSSVDPLGIGYNAQQSQIAIGSGGLFGKSFVSGSQTQLGFLPEKHTDFAFAVLSEEWGFLGSMTLIVLYTTLLAIIFSIAYRSKNYFSKLVS-IGIFAFFGVHFFINIGMTIGLLPVIGDPLPFLSYGGSTTAASSICIGLLLSSVASMKDLKLKLSISSIERPVV |
| 4Q2E Chain:A ((29-290)) | ----------ITASVVAPFVVLCFVS------------YESLIGLVSAILILAGYELITLEMKERDARFFYVILLALYPVLYG-----------LVFEEPTQPLSILFITGVVFSLITDKDPSQVFKTVAAFSIALIYVTFFLSFFLPIYR-DFGAANALLVLTSTWVFDSFAYFTGLKF------------------------------------------------------GRTRISPR-----YSPRKS------LEGVIGGFLGVVIYTFLYRLVVNDLLSVNVICFRTFLPFAATVAIMDTFGDIFECALKRHYGVKDS-GKTLP--GHGG----MLDRIDGLLFVAPVSYIVFKILEGVVR------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q2E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -307541 for 2105 contacts (-146.1/contact) +
2D Compatibility (PS) -27386 + (NN) -11603 + (LL) 7572
1D Compatibility (HY) -20400 + (ID) 2700
Total energy: -362058.0 ( -172.00 by residue)
QMean score : 0.357
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