Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQRSNILEITAGLFVLVFTIFLAFFAINKLSDIKKSYKGCYKIYGFFSNANGIEVGDSVKISGVNIGSITGISLDKATYVARLDMCISKDIKLPIDSSALIT-SSGVVGSKFVNISPGSGIKLISNGGKIEYTQSEANVGGIIDKILNMFSK
4JXK Chain:A ((135-216))
----------------------------------------------------------VKLDGMSTRTAAAIGTAGFTAAMSVEALQSRGVE-PGNGPVLVTGASGGVGTVAVDLLSAAGFEVVASSGKPEKAELLTQLGASKVIGRLPEPD
General information:
TITO was launched using:
RESULT:
Template:
4JXK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14247 for 523 contacts (-27.2/contact) +
2D Compatibility (PS) -8182 + (NN) 907 + (LL) 4480
1D Compatibility (HY) -1600 + (ID) 950
Total energy: -19592.0 ( -37.46 by residue)
QMean score : -0.051
(partial model without unconserved sides chains):
PDB file :
Tito_4JXK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JXK-query.scw
PDB file :
Tito_Scwrl_4JXK.pdb
: