Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQDSNASCNTGPFYKGVIKFLNQFQSRVNSEQSREDYVKESIIISLEDAISPFYSLVDKGVCYTIPNSERITLLDICVNQLVDNHRKIVHGVILLLSRLRRNRKSMLFNDKYFC
3Q30 Chain:A ((220-251))
--------------------------------------------------------------------ENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQVM
General information:
TITO was launched using:
RESULT:
Template:
3Q30.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7302 for 119 contacts (-61.4/contact) +
2D Compatibility (PS) -3074 + (NN) -932 + (LL) 3752
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -11456.0 ( -96.27 by residue)
QMean score : 0.178
(partial model without unconserved sides chains):
PDB file :
Tito_3Q30.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q30-query.scw
PDB file :
Tito_Scwrl_3Q30.pdb
: