Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNIEGQDFGVGLLFYNSGNPLTGVL---KFINFYDENNLVLQKDQRRNRQALLDRGRLFSNYLHIKQGWCLCHNVW
1LD8 Chain:A ((85-121))
-------------------NPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTR---------------------
General information:
TITO was launched using:
RESULT:
Template:
1LD8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1893 for 139 contacts (13.6/contact) +
2D Compatibility (PS) -3617 + (NN) -2985 + (LL) 2060
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -5749.0 ( -41.36 by residue)
QMean score : -0.024
(partial model without unconserved sides chains):
PDB file :
Tito_1LD8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LD8-query.scw
PDB file :
Tito_Scwrl_1LD8.pdb
: