Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGDAVKVIAEELKGYIERIEKLEQEKKNVQDQIHDVYAKAADKGWNIKVMKQIIRLRKMEDGDRAEQEILLNTYKRALGMSCEEN
2KNA Chain:A ((29-51))
----------------------------------PMVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQKDSMQD
General information:
TITO was launched using:
RESULT:
Template:
2KNA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6061 for 105 contacts (-57.7/contact) +
2D Compatibility (PS) -2573 + (NN) -1417 + (LL) 3204
1D Compatibility (HY) -2000 + (ID) 250
Total energy: -9097.0 ( -86.64 by residue)
QMean score : 0.897
(partial model without unconserved sides chains):
PDB file :
Tito_2KNA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KNA-query.scw
PDB file :
Tito_Scwrl_2KNA.pdb
: